生物信息学 相关数据库资源介绍

生物信息学相关数据库资源介绍刘吉平Reference：核酸及其相关数据库（核酸序列、基因组相关数据库、核酸三维结构、其他）2.蛋白质相关数据库（蛋白质序列、蛋白质三维结构、蛋白质组（二维凝胶电泳数据库）、信号传导及蛋白质-蛋白质相互作用相关数据库、DNA和蛋白质相互作用数据库）3.基因或蛋白质一些特定数据库4.糖类及其相关数据库5.蛋白质翻译后修饰相关数据库6.基因表达数据库7.人类基因突变及疾病相关数据库8.进化相关数据库及资源专利数据库资源目录服务器或网页一、核酸及其相关数据库1、核酸序列数据库EMBL-EMBLNucleotidesequencedatabase(EBI)*GenBank-GenBankNucleotideSequencedatabase(NCBI)*DDBJ-DNADataBankofJapan*BIOSINO我国的核酸序列公共数据库dbEST-DatabaseofExpressedSequenceTags(NCBI)dbSTS-DatabaseofSequenceTaggedSites(NCBI)2.基因组及相关数据库GenomicDatabasesGenomeWeb(HGMP)-AcatalogueofusefulWebsitesforGenomicswithasetofcollectionsofgenomedatabasesGSDB-GenomeSequencedatabase(NCGR)GOLD-GenomesOn-linedb一些数据库的直接链接3.核酸三维结构数据库NDB-NucleicAcidDatabank(3Dstructures)BNASDB-NucleicacidstructuredbfromUniversityofPune4.其他AsDb-AberrantSplicingdbACUTS-AncientconserveduntranslatedDNAsequencesdbCodonUsageDb-ThefrequencyofcodonuseineachorganismismadesearchablethroughthisWorldWideWebsite.EPD-EukaryoticPromoterdbHOVERGEN-HomologousVertebrateGenesdbIMGT-ImMunoGeneTicsdb[MirroratEBI]ISIS-IntronSequenceandInformationSystemRDP-RibosomaldbProjectgRNAsdb-GuideRNAdbPLACE-Plantcis-actingregulatoryDNAelementsdb其它PlantCARE-Plantcis-actingregulatoryDNAelementsdbsRNAdb-SmallRNAdbssurRNA-SmallribosomalsubunitdblsurRNA-Largeribosomalsubunitdb5SrRNA-5SribosomalRNAdbtmRNAWebsitetmRDB-tmRNAdBtRNA-tRNAcompilationfromtheUniversityofBayreuthuRNADB-uRNAdb其他RNAediting-RNAeditingsiteRNAmoddb-RNAmodificationdbTelDB-MultimediaTelomereResourceTRADAT-TRAnscriptionDatabasesandAnalysisToolsSubviralRNAdb-SmallcircularRNAsdb(viroidandviroid-like)TransgenicsCreTransgenicDatabase-CretransgenicmouselinesTransgenic/TargetedMutationDatabase-Informationontransgenicanimalsandtargetedmutations二.蛋白质序列和相关数据库SWISS-PROT-SWISS-PROTannotatedproteinsequencedbPIR-international-TheProteinInformationResource(proteinsequence)MIPS-Martinsriedinstituteforproteinsequenceandhomologydataandyeastgenomeinformation蛋白质及其相关数据库PROSITE-PROSITEdictionaryofproteinsitesandpatternsInterPro-IntegratedResourcesofProteinsDomainsandFunctionalSitesBLOCKS-BLOCKSdbDOMO-Proteindomaindb(Automaticallygenerated)Pfam-Proteinfamiliesdb(HMMderived)[MirroratSanger]PRINTS-ProteinMotiffingerprintdbProDom-Proteindomaindb(Automaticallygenerated)PROTOMAP-AnautomatichierarchicalclassificationofSWISS-PROTproteinsSBASE-SBASEdomaindb(Proteindomainsequencelibrary)SMART-Proteinsignallingandextracellulardomainpatterns(SimpleModularArchitectureResearchTool)ProClass-Proteinsequencealignmentsandcurationofproteinfamilies.蛋白质三维结构和相关数据库PDB-ProteinDataBank[MirrorsinEBI]BioMagResBank-Repositoryfordataonproteins,peptides,andnucleicacidsfromNMRspectroscopySWISS-MODELRepository-AutomaticallygeneratedproteinmodelsdbModBase-DbofcomparativeproteinstructuremodelsCATH-UCLBSMstructuralclassificationofproteinsSCOP-Structuralclassificationofproteins[MirroratUSA|Israel|Singapore|Australia]Mol_R_Us-MoleculesRUs,browserforPDBBMMDomainServer-BiomolecularModellingLaboratory(ICRF)proteindomainserverPRESAGE-Collaborativeresourceforstructuralgenomics蛋白质三维结构和相关数据库SBASE-SBASEdomaindb(Proteindomainsequencelibrary)SMART-Proteinsignallingandextracellulardomainpatterns(SimpleModularArchitectureResearchTool)ProClass-ProteinsequencealignmentsandcurationofproteinfamiliesKabat-KabatdbofproteinofimmunologicalinterestPMD-ProteinMutantdb蛋白质二维凝胶电泳数据库WORLD-2DPAGE-Acompleteindexof2D-PAGEdbandserversPhoretixlinks-Phoretixpageoflinksto2Dgeldb三、信号传导及蛋白质-蛋白质相互作用相关数据库DIP-DbofInteractingProteinsINTERACT-Protein-ProteininteractiondbProNet-Protein-ProteininteractiondbCANSITE-SignalTransduction'sWebSPAD-SignalingpathwaydbCSNDB-CellSignalingNetworksdb四、DNA和蛋白质相互作用数据库DPInteract-DNA-Proteinsinteractionsdb五、特定基因或蛋白质的数据库AAA-AAAfamilyofATPasesserverAcetylcholinesterasesALDH-AldehydedehydrogenasegenesuperfamilydbAminoacyl-tRNAsynthetasesinSWISS-PROT-Listofaminoacyl-tRNAsynthetasesinSWISS-PROTAARSDB-Aminoacyl-tRNAsynthetasesdbAllergensinSWISS-PROT-NomenclatureandindexofallergensinSWISS-PROT特定基因或蛋白质的数据库AMSDb-AntimicrobialsequencesdbAntibodyresourcepage-LinkstoantibodyrelatedWebresourcesAustralianvenomandtoxindbBacillusthuringiensistoxinspecificitydbTFII-BasaltranscriptionfactorsBloodgroupantigensinSWISS-PROTBCGD-BreastcancergenesdbfromMBCRBRENDA-Dbofenzymefunctionaldata特定基因或蛋白质的数据库EF-handCaBP-EF-handcalcium-bindingproteinsdbCAZy-Carbohydrate-ActiveenZYmesWebsiteCBSdomain-CystathionineBetaSynthasedomainCDantigensinSWISS-PROT-Nomenclatureforsurfaceproteinsofhumanleucocytes(CD)特定基因或蛋白质的数据库CDantigensinPROW-DatabaseoninformationaboutCDantigensChaperonin-InformationonGroELandGroESchaperoninsConotoxins-InformationonconotoxinsfromaWebsiteonconeshells。。etc。。糖类相关数据库CarbBank-ComplexCarbohydrateStructureDatabaseGlycoSuiteDB-DbofglycanstructuresTGN-TheGlycoscienceNetworkFCCA-ForumCarbohydratesComingofAgeCARBHYD-CarbohydrateinformationMonosacharidebrowser-SpacefillingFischerprojectionformonosaccharides蛋白质翻译后修饰相关数据库O